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members:bernard.gibaud:index [2019/04/23 10:15]
gibaud
members:bernard.gibaud:index [2022/04/08 19:05] (current)
gibaud [Current Position]
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 ====== Personal data ====== ====== Personal data ======
 +**Identifier** : [[https://​orcid.org/​0000-0002-1772-4887|ORCID ID]]
  
 {{ :​members:​bernard.gibaud:​bernard.gibaud.jpg?​150|}} {{ :​members:​bernard.gibaud:​bernard.gibaud.jpg?​150|}}
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   * Married, 3 children   * Married, 3 children
 **Email** : bernard.gibaud@univ-rennes1.fr\\ **Email** : bernard.gibaud@univ-rennes1.fr\\
-**Adresse** : Equipe MediCIS, LTSI Inserm 1099\\+**Address** : Equipe MediCIS, LTSI Inserm 1099\\
 Faculté de médecine\\ Faculté de médecine\\
 2 Avenue du Pr Léon Bernard\\ 2 Avenue du Pr Léon Bernard\\
 35043 Rennes cedex - France\\ 35043 Rennes cedex - France\\
-**Tél** : +33 2 23 23 45 90\\ +**Phone** : +33 2 23 23 45 90\\ 
-**Portable** : +33 6 51 83 07 89\\ +**Mobile** : +33 6 51 83 07 89\\ 
-**Assistante** : Noémie BUISARD tel : +33 2 23 23 47 18\\+**Adm. Assistant** : Noémie BUISARD tel : +33 2 23 23 69 30\\
  
 +====== Current Position ======
 +
 +  * Retired since 1rst April 2021
 +  * My previous position was Chargé de Recherche Hors Classe (CRHC) at UMR LTSI Inserm 1099, a research lab of Inserm and Université de Rennes 1
  
 ====== Field of Activity ====== ====== Field of Activity ======
  
-  * My current research ​is oriented on the creation and use of ontologies and other semantic web technologies to support the annotation and sharing of image related data, knowledge, and computing resources for applications in biomedical research and PACS, especially in neuroimaging and image guided surgery.+  * My current research ​was oriented on the creation and use of ontologies and other semantic web technologies to support the annotation and sharing of image related data, knowledge, and computing resources for applications in biomedical research and PACS, especially in neuroimaging and image guided surgery.
  
 ====== Education ====== ====== Education ======
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   * 3D multimodal imaging in neurosurgery \\   * 3D multimodal imaging in neurosurgery \\
   * SIRENE Project: first generation national PACS project (1985-1989)\\   * SIRENE Project: first generation national PACS project (1985-1989)\\
-  * MIMOSA Project (Medical Image Management in an Open System Architecture),​ in the contex of the EurIPACS project - AIM DG XIII program (1992-1994) \\ +  * MIMOSA Project (Medical Image Management in an Open System Architecture),​ in the contex of the EurIPACS project - Advanced Informatics in Medicine ​DG XIII program (1992-1994) \\ 
-  * [[ http://​www.irisa.fr/​visages/​demo/​Neurobase/​ | NeuroBase project ​]] (2002-2006)+  * NeuroBase project (2002-2006)
   * [[http://​neurolog.i3s.unice.fr/​neurolog | NeuroLOG project ]]: Sharing of distributed heterogeneous resources in neuroimaging,​ ANR grant (2007-2010)   * [[http://​neurolog.i3s.unice.fr/​neurolog | NeuroLOG project ]]: Sharing of distributed heterogeneous resources in neuroimaging,​ ANR grant (2007-2010)
   * [[http://​www.creatis.insa-lyon.fr/​vip/​ | Virtual Imaging Platform Project ]], ANR grant (2010-2012)   * [[http://​www.creatis.insa-lyon.fr/​vip/​ | Virtual Imaging Platform Project ]], ANR grant (2010-2012)
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   * [[http://​credible.i3s.unice.fr/​| CrEDIBLE Project ]], about ontology-based federated systems in medical imaging, Supported by the CNRS Mastodons Program (2012-2015)   * [[http://​credible.i3s.unice.fr/​| CrEDIBLE Project ]], about ontology-based federated systems in medical imaging, Supported by the CNRS Mastodons Program (2012-2015)
   * Ontology-based image annotation systems (2006-2015),​ currently applied in the field of DTI for brain connections annotation   * Ontology-based image annotation systems (2006-2015),​ currently applied in the field of DTI for brain connections annotation
-  * [[http://b-com.org/​wp/​about/| b<>​com Technology Research Institute (IRT)]]: IsIMED project on distributed medical imaging infostructure and semantic representation of imaging biomarkers (2013-2017)+  * [[https://b-com.com/fr| b<>​com Technology Research Institute (IRT)]]: IsIMED project on distributed medical imaging infostructure and semantic representation of imaging biomarkers (2013-2017
 +  * Member of the ESR eHealth and Informatics Subcommittee [[http://​www.myesr.org/​cms/​website.php?​id=/​en/​membership/​statutory_committees_working_groups/​professional_organisation_committee_poc/​subcommittee_on_ehealth_and_informatics.htm |  ]]: (2016-2019) 
 +  * [[https://​medicis.univ-rennes1.fr/​activities/​theme1/​projects/​s3pm/​|S3PM project ]] (Synthesis and Simulation of Surgical Process Models), Supported by the CominLabs Labex. (2013-2019) 
 +  * Member of board of the Research Committee of the European Society of Radiology (2015-2019)  
 +  * CONDOR-SET and [[https://​condor-project.eu/​ |CONDOR]] projects in collaboration with the [[https://​b-com.com/​fr| b<>​com Technology Research Institute (IRT)]]: these projects deal with the management and annotation of real time video in the operating room (CONDOR-SET will contribute to an extension of the DICOM standard called DICOM-Live supporting the real-time exchange of video) (2017-2020)
  
  
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 ====== Major Current Research Activities ====== ====== Major Current Research Activities ======
  
-  * MEDIRAD project: a newly accepted ​European ​research project on low doses effects ​of ionising radiations in medicine  ​(2017- ...) +  * Member of the MIABIS-DICOM group (collaboration between the European ​Society ​of Radiology and BBMRI-ERIC ​(under the auspices of the Research Committee of ESR) [[https://www.myesr.org/article/145 ]]: (2015-...)
-  * CONDOR-SET and CONDOR projects in collaboration with the [[http://b-com.org/wp/about/| b<>​com Technology Research Institute (IRT)]]: these projects deal with the management and annotation of real time video in the operating room (CONDOR-SET will contribute to an extension of the DICOM standard called DICOM-Live supporting the real-time exchange of video) ​(2017-...)+
   * [[https://​ontospm.univ-rennes1.fr/​doku.php?​id=start| OntoSPM collaborative Action]], a collaboration aiming at developing ontologies and knowledge bases in the domain of Surical Process Models (2016- ...)   * [[https://​ontospm.univ-rennes1.fr/​doku.php?​id=start| OntoSPM collaborative Action]], a collaboration aiming at developing ontologies and knowledge bases in the domain of Surical Process Models (2016- ...)
-  * Member of board of the Research Committee of the European Society of Radiology'​s ​[[https://www.myesr.org/​cms/​website.php?​id=/​en/​membership/​statutory_committees_working_groups/​research_committee.htm#​BOARD_RESEARCH ​ ]]: (2015-...)   +  * [[http://www.medirad-project.eu |MEDIRAD project]]: a European research project on low doses effects of ionising radiations in medicine  ​(2017- ...) [[MEDIRAD-page|Description of our contribution]] 
-  * Member of the ESR eHealth and Informatics Subcommittee ​[[http://www.myesr.org/cms/​website.php?​id=/en/​membership/​statutory_committees_working_groups/​professional_organisation_committee_poc/​subcommittee_on_ehealth_and_informatics.htm ​ ]](2016-...) +  * Collaboration with [[https://www.univ-rennes1.fr/actualites/labcom-litis-faire-progresser-la-medecine-par-la-structuration-et-letude-du-big-data-en-sante ​|LITIS LabCom]] Co-supervision of Pierre Le Mordant PhD Thesis ​(2019-...) 
-  * [[http://www.s3pm.cominlabs.ueb.eu/|S3PM project ​]] (Synthesis and Simulation ​of Surgical Process Models), Supported by the CominLabs Labex. ​(2013-...)+  * [[https://b-com.com/frb<>​com Technology Research Institute (IRT)]]: TAXY project on NLP analysis ​of clinical reports ​(2020-...) 
  
  
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   * Standardization : CEN TC251 WG 4 then 7 (1990-1999);​ DICOM WG23 (as representative of the French Society of Radiology IT group)   * Standardization : CEN TC251 WG 4 then 7 (1990-1999);​ DICOM WG23 (as representative of the French Society of Radiology IT group)
   * Contribution to the [[http://​shanoir.org/​ | SHANOIR Software development package]]   * Contribution to the [[http://​shanoir.org/​ | SHANOIR Software development package]]
-  * [[http://​stic-sante.org/​ |GDR STIC-Santé]] - 2007-2011: Co-chair (with M-C Jaulent, Paris) of Section C "​Medical Information Systems and Databases"​+  * GDR STIC-Santé - 2007-2011: Co-chair (with M-C Jaulent, Paris) of Section C "​Medical Information Systems and Databases"​
    
  
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   * [[https://​esir.univ-rennes1.fr/​spe-ti-option-ingenierie-pour-la-sante |Ecole Supérieure d'​Ingénieurs de Rennes]] (Option e-Health technology) ​   * [[https://​esir.univ-rennes1.fr/​spe-ti-option-ingenierie-pour-la-sante |Ecole Supérieure d'​Ingénieurs de Rennes]] (Option e-Health technology) ​
-  * Master SIBM (Signals and Images in Biology and Medicine), Universities of Rennes, Angers and Brest - in charge (with C. Cavaro-Ménard,​ Angers) of the organization of Module 3 "​Management of complex data"​ +  * [[https://​formations.univ-rennes1.fr/​formation/​master-2-signaux-et-images-en-biologie-et-medecine-sibm?​studentstatus=112 | Master SIBM (Signals and Images in Biology and Medicine)]], Universities of Rennes, Angers and Brest - in charge (with C. Cavaro-Ménard,​ Angers) of the organization of Module 3 "​Management of complex data"​ 
-  * Institut National des Sciences et Techniques Nucléaires (CEA, Saclay), Diplôme de Qualification en Physique radiologique et médicale (DQPRM)+  * Institut National des Sciences et Techniques Nucléaires (CEA, Saclay), ​[[http://​www-instn.cea.fr/​formations/​diplomes-et-titres/​liste-des-diplomes-et-titres/​diplome-de-qualification-en-physique-radiologique-et-medicale-dqprm,​13.html| ​Diplôme de Qualification en Physique radiologique et médicale (DQPRM)]]
   * Master Biomedical Equipment, University of Technology of Compiègne - Management of medical images.   * Master Biomedical Equipment, University of Technology of Compiègne - Management of medical images.
  
 +====== PhD supervision ======
 +
 +  * On going PhDs : with Marc Cuggia: [[https://​www.linkedin.com/​in/​pierre-lemordant-052ab4133/​|Pierre Le Mordant]] (2019-...)
 +  * Past PhDs : with Sandrine Voros: [[https://​www.linkedin.com/​in/​arthur-derathé/​|Arthur Derathé]] (2016-2020);​ [[https://​www.linkedin.com/​in/​emna-amdouni-a2904a137/​|Emna Amdouni]] (2014-2017); ​ [[https://​www.linkedin.com/​in/​gautier-picard-446584156/​|Gautier Picard]] (2016-2017);​ [[https://​www.linkedin.com/​in/​tristan-moreau-46955717b/​|Tristan Moreau]] (2010-2015);​ [[https://​www.linkedin.com/​in/​bacem-wali-71a51076/​|Bacem Wali]] (2008-2013);​ with Christine Golbreich: [[https://​www.linkedin.com/​in/​amechouc/​|Ammar Mechouche]] (2005-2009);​ [[https://​www.linkedin.com/​in/​lynda-temal-32a206a/​|Lynda Temal]] (2004-2008);​ [[https://​www.linkedin.com/​in/​olivier-dameron-ba302019/​|Olivier Dameron]] (2000-2003);​ with Jean-Marie Scarabin and Pierre Jannin: [[https://​www.linkedin.com/​in/​melanie-raimbault/​|Mélanie Raimbault]] (2000-2004),​ [[https://​www.linkedin.com/​in/​berengere-aubert-broche-2a81811/​|Bérengère Aubert-Broche]] (2000-2004),​ [[https://​www.linkedin.com/​in/​christophe-grova-b0737112a/​|Christophe Grova]] (2000-2004);​ with Jean-Marie Scarabin: ​ [[https://​www.chu-rennes.fr/​je-cherche/​medecins-349/​professeur-jean-francois-heautot-676?​cHash=ff18d43966a32ee19c5ee97ea382f5c7.html|Jean-François Heautot]] (1994-1998);​ with Pierre Le Beux: [[https://​www.linkedin.com/​in/​hervé-garfagni-0576466/​| Hervé Garfagni]] (1992-1996);​ with Patrick Bosc and André Lasquellec: [[https://​www.linkedin.com/​in/​yapson/​|Jean-Hilaire Yapi]] (1992-1996);​ with Jean-Pierre Barthélémy and Serge Garlatti: Elisabeth Montabord (1991-1996);​ with Jean-Louis Coatrieux: [[https://​usb.academia.edu/​LuisUrbano|Luis Urbano Rodriguez]] (1987-1991).
  
 ====== Some Recent Publications ====== ====== Some Recent Publications ======
 +  * Gibaud B, Brenet M, Pasquier G, Vergara Gil A, Bardiès M, Stratakis J, Damilakis J, van Dooren N, Spaltenstein J, and Ratib O. A semantic database for integrated management of image and dosimetric data in low radiation dose research in medical imaging. American Medical Informatics Association (AMIA) Conference, November 2020, Chicago (USA), 492-501. {{:​members:​bernard.gibaud:​AMIA-medirad-final.pdf|"​Paper"​}} {{:​members:​bernard.gibaud:​s71-bgibaudamia2020.pdf|slides}}
 +  * Gibaud B. European imaging biobanks. Iranian Brain Mapping Biobank Webinar Series, 9th July, 2020 {{:​members:​bernard.gibaud:​bgibaudwebinariran2020.pdf|"​Slides"​}}
 +  * Gibaud B, Brenet M, Pasquier G, Pasquier G, Roduit N, Spaltenstein J, Moubri-Tournes C, Van Dooren N et Ratib O. Développement d’une ressource de stockage intégrée pour les images et les données dosimétriques. Journée organisée par la Société Française de Radioprotection:​ La recherche Européenne en Radioprotection:​ quelles nouveautés ? IRSN, Fontenay-aux-Roses,​ 4 Février 2020 {{:​members:​bernard.gibaud:​medirad-sfrp-irsn-04022020.ppt|"​Slides"​}}
   * Gibaud B. Imaging biobanks: a key resource for biomedical research. French-Chinese Seminar on ICT for Health, 22 April 2019, Nanjing (China). {{:​members:​bernard.gibaud:​bgibaudnankin2019.ppt|"​Slides"​}}   * Gibaud B. Imaging biobanks: a key resource for biomedical research. French-Chinese Seminar on ICT for Health, 22 April 2019, Nanjing (China). {{:​members:​bernard.gibaud:​bgibaudnankin2019.ppt|"​Slides"​}}
   * Gibaud B, Pasquier G, Cordonnier E. How to anonymise imaging data for research ? Postgraduate Educational Programme: Joint Session of the ESR and BBMRI-ERIC:"​Will the General Data Protection Regulation (GDPR) hamper the secondary use of clinical imaging data for research?",​ European Congress of Radiology 2019, Vienna (Austria).{{:​members:​bernard.gibaud:​bernardgibaudecr2019final.ppt|"​Slides"​}}   * Gibaud B, Pasquier G, Cordonnier E. How to anonymise imaging data for research ? Postgraduate Educational Programme: Joint Session of the ESR and BBMRI-ERIC:"​Will the General Data Protection Regulation (GDPR) hamper the secondary use of clinical imaging data for research?",​ European Congress of Radiology 2019, Vienna (Austria).{{:​members:​bernard.gibaud:​bernardgibaudecr2019final.ppt|"​Slides"​}}
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   * Gibaud B. Organisation of dose management systems and repositories for radiation protection and biomedical research: possibilities and limitations of current implementations and standards. EFOMP Workshop: Radiation Dose Management systems and repositories:​ the present and the future. European Congress of Radiology 2018, Vienna (Austria). {{:​members:​bernard.gibaud:​bernardgibaudecr2018efomp.ppt|"​Slides"​}} ​   * Gibaud B. Organisation of dose management systems and repositories for radiation protection and biomedical research: possibilities and limitations of current implementations and standards. EFOMP Workshop: Radiation Dose Management systems and repositories:​ the present and the future. European Congress of Radiology 2018, Vienna (Austria). {{:​members:​bernard.gibaud:​bernardgibaudecr2018efomp.ppt|"​Slides"​}} ​
   * Gibaud B. Image sharing and biobanks. EuSoMII Academy: Game changers in radiology, Rotterdam, November 18th, 2017. {{:​members:​bernard.gibaud:​bernardgibaudeusomii2017.pdf|"​Slides"​}} ​   * Gibaud B. Image sharing and biobanks. EuSoMII Academy: Game changers in radiology, Rotterdam, November 18th, 2017. {{:​members:​bernard.gibaud:​bernardgibaudeusomii2017.pdf|"​Slides"​}} ​
-  * Gibaud B. Intégration du compte rendu structuré dand l'​environnement radiologique moderne. Journées Francophones de Radiologie. 15 Octobre 2016. Paris. {{:​members:​bernard.gibaud:​bernard-gibaud-jfr2016.ppt|"​Slides"​}} ​+  ​* Gibaud B. RE-engineering of RadLex:​remarks and proposals. Private communication to the RadLex Steering Committee. 19 October 2017. {{:​members:​bernard.gibaud:​bernard-gibaud-radlex19102017v2.ppt|"​Slides"​}}  
 +  ​* Gibaud B. Intégration du compte rendu structuré dand l'​environnement radiologique moderne. Journées Francophones de Radiologie. 15 Octobre 2016. Paris. {{:​members:​bernard.gibaud:​bernard-gibaud-radlex19102017v2.ppt|"​Slides"​}} ​
   * Holub P., Gibaud B. Biobanks and Imaging; the bioinformatic challenge, from MIABIS to DICOM. Medical imaging and biobanking (radiology and digital pathology) - a joint BBMRI/ESR session, Europe Biobank Week, 15 September 2016, Vienna (Austria). {{:​members:​bernard.gibaud:​esr-bbmri-eric-wg-petrholub-bernardgibaud.pdf|"​Slides"​}} ​   * Holub P., Gibaud B. Biobanks and Imaging; the bioinformatic challenge, from MIABIS to DICOM. Medical imaging and biobanking (radiology and digital pathology) - a joint BBMRI/ESR session, Europe Biobank Week, 15 September 2016, Vienna (Austria). {{:​members:​bernard.gibaud:​esr-bbmri-eric-wg-petrholub-bernardgibaud.pdf|"​Slides"​}} ​
   * Gibaud B. Semantic models and ontologies in Surgical Data Science. Workshop on Surgical Data Science, June 20, 2016, Heidelberg (Germany). {{:​members:​bernard.gibaud:​sds-ws-bernardgibaud.ppt|"​Slides"​}} ​   * Gibaud B. Semantic models and ontologies in Surgical Data Science. Workshop on Surgical Data Science, June 20, 2016, Heidelberg (Germany). {{:​members:​bernard.gibaud:​sds-ws-bernardgibaud.ppt|"​Slides"​}} ​
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 ====== Resources ====== ====== Resources ======
  
-  * Gibaud B. : Intéropérabilité syntaxique et sémantique pour l’échange de données et de connaissances en imagerie médicale, Thèse d’Habilitation à diriger des recherches, Université de Rennes I, 2000.{{:​members:​bernard.gibaud:​hdrbgibaud.pdf|Habilitation thesis}}+  * Gibaud B. : Intéropérabilité syntaxique et sémantique pour l’échange de données et de connaissances en imagerie médicale, Thèse d’Habilitation à diriger des recherches, Université de Rennes I, 2000.{{:​members:​bernard.gibaud:​hdrbgibaud.pdf|Habilitation thesis}} {{:​members:​bernard.gibaud:​slideshdrbgibaud.pdf|Slides ​Habilitation thesis}}
   * Imaging Biomarkers Ontology (b<>​com,​ Emna Amdouni et Bernard Gibaud). {{:​members:​bernard.gibaud:​IBO-final-version.zip|IBO ontology files}}   * Imaging Biomarkers Ontology (b<>​com,​ Emna Amdouni et Bernard Gibaud). {{:​members:​bernard.gibaud:​IBO-final-version.zip|IBO ontology files}}
  
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 [[http://​www.ncbi.nlm.nih.gov/​pubmed?​term=Gibaud B[Author]|PubMed list]] [[http://​www.ncbi.nlm.nih.gov/​pubmed?​term=Gibaud B[Author]|PubMed list]]
  
-{{:​members:​bernard.gibaud:​publicationsbgibaud.pdf|}}+{{:​members:​bernard.gibaud:​publicationsbgibaudv3.pdf|All publications}} 
 ====== Complete list of Publications ====== ====== Complete list of Publications ======
 [[https://​medicis.univ-rennes1.fr/​_media/​members/​bernard.gibaud/​publicationsbgibaudv2.pdf|Complete list]] [[https://​medicis.univ-rennes1.fr/​_media/​members/​bernard.gibaud/​publicationsbgibaudv2.pdf|Complete list]]
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