Differences

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--- software [2012/12/05 17:32]
flalys
+++ software [2022/11/28 14:05] (current)
ahuaulme
@@ Line 1: / Line 1: @@
-<html><div class="pageTitle"> Software Development </div></html>
+<html><div class="pageTitle"> Available data-sets </div></html>
-====== ProcSide ======
+====== PETRAW ======
+The “PEg TRAnsfer Workflow recognition by different modalities” (PETRAW) data-set has been present as a sub-challenge of [[https://endovis.grand-challenge.org/|Endovis2021]] at [[https://www.miccai2021.org/en/|MICCAI2021]].
-[[:index:software:procside|ProcSide]] is an open source platform software used to record surgical procedure and perform statisticals studies. \\
-====== Shanoir ======
+The data-set contains 125 peg transfer sequences performed on a virtual simulator. Each sequence is composed of the following information:
+  * Video
+  * Kinematic data
+  * Segmentation
+  * Workflow annotation at 3 levels of granularity (phases, steps, and activities)
-[[http://shanoir.org/ | SHANOIR Software]]: a software package to share neuroimaging data
+{{ ::petraw.jpg?nolink&400 |}}
-====== Taopy ======
+You can found additional information and download the data-set here: https://www.synapse.org/PETRAW
-Taopy, is an extension of NIPY ([[http://nipy.sourceforge.net/]]), a Python project that provides a uniform interface to existing neuroimaging software (FSL, Freesurfer, Brainvisa,...) and facilitates interaction between these packages within a single workflow.
+====== MISAW ======
+The “MIcro-Surgical Anastomose Workflow recognition on training sessions” (MISAW) data-set has been present as a sub-challenge of [[https://endovis.grand-challenge.org/|Endovis2020]] at [[https://www.miccai2020.org/en/|MICCAI2020]].
-====== IGNS Planner ======
-[[:activities:theme1:projects:igns:index|IGNSPlanner ]] is a software that assists the neurosurgeon in preparing its intervention. It manages a planning database (patient, surgeon, pathology, etc), it is also compatible with Dicom images archiving systems and do lots of processing on data (segmentation, tractography for example).\\
+The data-set contains 27 micro-anastomosis training sequences and is composed of the following information: {{  :snapshots_micro_surgical_anastomose.png?200|MISAW data-set snapshots}}
+  * Stereoscopic video
+  * Kinematic data
+  * Workflow annotation at 3 levels of granularity (phases, steps, and activities)
+You can found additional information and download the data-set here: https://www.synapse.org/MISAW
+====== Ontologies  ======
+[[https://ontospm.univ-rennes1.fr|OntoSPM]] is an ontology for Surgical Process Models. It became an european intitiative starting in 2016 and involving 15 active european institutions and a network of about 50 partners in total.\\
+====== NeuroSurgicalTools dataset  ======
+You can access the dataset or download directly corresponding images and annotations files [[https://ged.univ-rennes1.fr/nuxeo/nxpath/default/default-domain/workspaces/recherche/LTSI/MediCIS/NeuroSurgicalToolsDatase@view_documents|here]].
+[[https://dbouget.bitbucket.io/2015_tmi_surgical_tool_detection/|{{  :dataneurosurg.png?200}}]]
-<html><div class="pageTitle"> Available data-sets </div></html>
-\\
-\\
 ====== MR mono-subject template ======
 You can access [[http://www.jannin.org/mritemplate/|here]] the images files of the MRI T1 template, T2 Template and T1/T2 mixed MR template which are made freely available to our community. These templates were created in order to improve visualization of spatially complex deep brain structures such as basal ganglia. They can used as a reference for neuroimage processing methods.
+<html><div class="pageTitle"> Software Development </div></html>
+====== ProcSide ======
+[[:index:software:procside|ProcSide]] is an open source platform software used to record surgical procedure and perform statistical studies. \\
+====== pyDBS ======
+[[:index:software:pydbs|pyDBS]] is a software environment for planning, performing and assessing deep brain stimulation from medical images and digital atlases. It is developed with in the ANR [[http://www.anr-acoustic.org | ACouStiC]] project. \\
+====== taopy ======
+taopy, is an extension of NIPY ([[http://nipy.sourceforge.net/]]), a Python project that provides a uniform interface to existing neuroimaging software (FSL, Freesurfer, Brainvisa, dtk...) and integrates new functionalities.