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====== Personal data ====== | ====== Personal data ====== | ||
+ | **Identifier** : [[https://orcid.org/0000-0002-1772-4887|ORCID ID]] | ||
{{ :members:bernard.gibaud:bernard.gibaud.jpg?150|}} | {{ :members:bernard.gibaud:bernard.gibaud.jpg?150|}} | ||
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**Assistante** : Noémie BUISARD tel : +33 2 23 23 47 18\\ | **Assistante** : Noémie BUISARD tel : +33 2 23 23 47 18\\ | ||
+ | ====== Current Position ====== | ||
+ | |||
+ | * My current position is Chargé de Recherche Hors Classe (CRHC) at UMR LTSI Inserm 1099, a research lab of Inserm and Université de Rennes 1 | ||
====== Field of Activity ====== | ====== Field of Activity ====== | ||
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* 3D multimodal imaging in neurosurgery \\ | * 3D multimodal imaging in neurosurgery \\ | ||
* SIRENE Project: first generation national PACS project (1985-1989)\\ | * SIRENE Project: first generation national PACS project (1985-1989)\\ | ||
- | * MIMOSA Project (Medical Image Management in an Open System Architecture), in the contex of the EurIPACS project - AIM DG XIII program (1992-1994) \\ | + | * MIMOSA Project (Medical Image Management in an Open System Architecture), in the contex of the EurIPACS project - Advanced Informatics in Medicine DG XIII program (1992-1994) \\ |
- | * [[ http://www.irisa.fr/visages/demo/Neurobase/ | NeuroBase project ]] (2002-2006) | + | * NeuroBase project (2002-2006) |
* [[http://neurolog.i3s.unice.fr/neurolog | NeuroLOG project ]]: Sharing of distributed heterogeneous resources in neuroimaging, ANR grant (2007-2010) | * [[http://neurolog.i3s.unice.fr/neurolog | NeuroLOG project ]]: Sharing of distributed heterogeneous resources in neuroimaging, ANR grant (2007-2010) | ||
* [[http://www.creatis.insa-lyon.fr/vip/ | Virtual Imaging Platform Project ]], ANR grant (2010-2012) | * [[http://www.creatis.insa-lyon.fr/vip/ | Virtual Imaging Platform Project ]], ANR grant (2010-2012) | ||
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* [[http://credible.i3s.unice.fr/| CrEDIBLE Project ]], about ontology-based federated systems in medical imaging, Supported by the CNRS Mastodons Program (2012-2015) | * [[http://credible.i3s.unice.fr/| CrEDIBLE Project ]], about ontology-based federated systems in medical imaging, Supported by the CNRS Mastodons Program (2012-2015) | ||
* Ontology-based image annotation systems (2006-2015), currently applied in the field of DTI for brain connections annotation | * Ontology-based image annotation systems (2006-2015), currently applied in the field of DTI for brain connections annotation | ||
- | * [[http://b-com.org/wp/about/| b<>com Technology Research Institute (IRT)]]: IsIMED project on distributed medical imaging infostructure and semantic representation of imaging biomarkers (2013-2017) | + | * [[https://b-com.com/fr| b<>com Technology Research Institute (IRT)]]: IsIMED project on distributed medical imaging infostructure and semantic representation of imaging biomarkers (2013-2017) |
+ | * Member of the ESR eHealth and Informatics Subcommittee [[http://www.myesr.org/cms/website.php?id=/en/membership/statutory_committees_working_groups/professional_organisation_committee_poc/subcommittee_on_ehealth_and_informatics.htm | ]]: (2016-2019) | ||
+ | * [[https://medicis.univ-rennes1.fr/activities/theme1/projects/s3pm/|S3PM project ]] (Synthesis and Simulation of Surgical Process Models), Supported by the CominLabs Labex. (2013-2019) | ||
+ | * Member of board of the Research Committee of the European Society of Radiology (2015-2019) | ||
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====== Major Current Research Activities ====== | ====== Major Current Research Activities ====== | ||
- | * MEDIRAD project: a newly accepted European research project on low doses effects of ionising radiations in medicine (2017- ...) | + | * [[http://www.medirad-project.eu |MEDIRAD project]]: a European research project on low doses effects of ionising radiations in medicine (2017- ...) [[MEDIRAD-page|Description of our contribution]] |
- | * CONDOR-SET and CONDOR projects in collaboration with the [[http://b-com.org/wp/about/| b<>com Technology Research Institute (IRT)]]: these projects deal with the management and annotation of real time video in the operating room (CONDOR-SET will contribute to an extension of the DICOM standard called DICOM-Live supporting the real-time exchange of video) (2017-...) | + | * Collaboration with [[https://www.univ-rennes1.fr/actualites/labcom-litis-faire-progresser-la-medecine-par-la-structuration-et-letude-du-big-data-en-sante |LITIS LabCom]] Co-supervision of Pierre Le Mordant PhD Thesis (2019-...) |
* [[https://ontospm.univ-rennes1.fr/doku.php?id=start| OntoSPM collaborative Action]], a collaboration aiming at developing ontologies and knowledge bases in the domain of Surical Process Models (2016- ...) | * [[https://ontospm.univ-rennes1.fr/doku.php?id=start| OntoSPM collaborative Action]], a collaboration aiming at developing ontologies and knowledge bases in the domain of Surical Process Models (2016- ...) | ||
- | * Member of board of the Research Committee of the European Society of Radiology's [[https://www.myesr.org/cms/website.php?id=/en/membership/statutory_committees_working_groups/research_committee.htm#BOARD_RESEARCH | ]]: (2015-...) | + | * Member of the MIABIS-DICOM group (collaboration between the European Society of Radiology and BBMRI-ERIC (under the auspices of the Research Committee of ESR) [[https://www.myesr.org/article/145| ]]: (2015-...) |
- | * Member of the ESR eHealth and Informatics Subcommittee [[http://www.myesr.org/cms/website.php?id=/en/membership/statutory_committees_working_groups/professional_organisation_committee_poc/subcommittee_on_ehealth_and_informatics.htm | ]]: (2016-...) | + | * [[https://b-com.com/fr| b<>com Technology Research Institute (IRT)]]: TAXY project on NLP analysis of clinical reports (2020-...) |
- | * [[http://www.s3pm.cominlabs.ueb.eu/|S3PM project ]] (Synthesis and Simulation of Surgical Process Models), Supported by the CominLabs Labex. (2013-...) | + | |
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* Standardization : CEN TC251 WG 4 then 7 (1990-1999); DICOM WG23 (as representative of the French Society of Radiology IT group) | * Standardization : CEN TC251 WG 4 then 7 (1990-1999); DICOM WG23 (as representative of the French Society of Radiology IT group) | ||
* Contribution to the [[http://shanoir.org/ | SHANOIR Software development package]] | * Contribution to the [[http://shanoir.org/ | SHANOIR Software development package]] | ||
- | * [[http://stic-sante.org/ |GDR STIC-Santé]] - 2007-2011: Co-chair (with M-C Jaulent, Paris) of Section C "Medical Information Systems and Databases" | + | * GDR STIC-Santé - 2007-2011: Co-chair (with M-C Jaulent, Paris) of Section C "Medical Information Systems and Databases" |
====== Teaching ====== | ====== Teaching ====== | ||
- | * [[http://etudes.univ-rennes1.fr/master-mtibh |Master MTIBH]] (Methods of processing of biomedical and healthcare information), University of Rennes I - in charge of the organization of Module 7 "Integration of data and systems" | + | * [[https://esir.univ-rennes1.fr/spe-ti-option-ingenierie-pour-la-sante |Ecole Supérieure d'Ingénieurs de Rennes]] (Option e-Health technology) |
- | * Master SIBM (Signals and Images in Biology and Medicine), Universities of Rennes, Angers and Brest - in charge (with C. Cavaro-Ménard, Angers) of the organization of Module 3 "Management of complex data" | + | * [[https://formations.univ-rennes1.fr/formation/master-2-signaux-et-images-en-biologie-et-medecine-sibm?studentstatus=112 | Master SIBM (Signals and Images in Biology and Medicine)]], Universities of Rennes, Angers and Brest - in charge (with C. Cavaro-Ménard, Angers) of the organization of Module 3 "Management of complex data" |
- | * Master SIBM (Signals and Images and Medicine), University of Paris XII-Créteil - The DICOM Standard. | + | * Institut National des Sciences et Techniques Nucléaires (CEA, Saclay), [[http://www-instn.cea.fr/formations/diplomes-et-titres/liste-des-diplomes-et-titres/diplome-de-qualification-en-physique-radiologique-et-medicale-dqprm,13.html| Diplôme de Qualification en Physique radiologique et médicale (DQPRM)]] |
* Master Biomedical Equipment, University of Technology of Compiègne - Management of medical images. | * Master Biomedical Equipment, University of Technology of Compiègne - Management of medical images. | ||
+ | ====== PhD supervision ====== | ||
+ | |||
+ | * On going PhDs : with Marc Cuggia: [[https://www.linkedin.com/in/pierre-lemordant-052ab4133/|Pierre Le Mordant]] (2019-...) | ||
+ | * Past PhDs : with Sandrine Voros: [[https://www.linkedin.com/in/arthur-derathé/|Arthur Derathé]] (2016-2020); [[https://www.linkedin.com/in/emna-amdouni-a2904a137/|Emna Amdouni]] (2014-2017); [[https://www.linkedin.com/in/gautier-picard-446584156/|Gautier Picard]] (2016-2017); [[https://www.linkedin.com/in/tristan-moreau-46955717b/|Tristan Moreau]] (2010-2015); [[https://www.linkedin.com/in/bacem-wali-71a51076/|Bacem Wali]] (2008-2013); with Christine Golbreich: [[https://www.linkedin.com/in/amechouc/|Ammar Mechouche]] (2005-2009); [[https://www.linkedin.com/in/lynda-temal-32a206a/|Lynda Temal]] (2004-2008); [[https://www.linkedin.com/in/olivier-dameron-ba302019/|Olivier Dameron]] (2000-2003); with Jean-Marie Scarabin and Pierre Jannin: [[https://www.linkedin.com/in/melanie-raimbault/|Mélanie Raimbault]] (2000-2004), [[https://www.linkedin.com/in/berengere-aubert-broche-2a81811/|Bérengère Aubert-Broche]] (2000-2004), [[https://www.linkedin.com/in/christophe-grova-b0737112a/|Christophe Grova]] (2000-2004); with Jean-Marie Scarabin: [[https://www.chu-rennes.fr/je-cherche/medecins-349/professeur-jean-francois-heautot-676?cHash=ff18d43966a32ee19c5ee97ea382f5c7.html|Jean-François Heautot]] (1994-1998); with Pierre Le Beux: [[https://www.linkedin.com/in/hervé-garfagni-0576466/| Hervé Garfagni]] (1992-1996); with Patrick Bosc and André Lasquellec: [[https://www.linkedin.com/in/yapson/|Jean-Hilaire Yapi]] (1992-1996); with Jean-Pierre Barthélémy and Serge Garlatti: Elisabeth Montabord (1991-1996); with Jean-Louis Coatrieux: [[https://usb.academia.edu/LuisUrbano|Luis Urbano Rodriguez]] (1987-1991). | ||
====== Some Recent Publications ====== | ====== Some Recent Publications ====== | ||
+ | * Gibaud B, Brenet M, Pasquier G, Vergara Gil A, Bardiès M, Stratakis J, Damilakis J, van Dooren N, Spaltenstein J, and Ratib O. A semantic database for integrated management of image and dosimetric data in low radiation dose research in medical imaging. American Medical Informatics Association (AMIA) Conference, November 2020, Chicago (USA), 492-501. {{:members:bernard.gibaud:AMIA-medirad-final.pdf|"Paper"}} {{:members:bernard.gibaud:s71-bgibaudamia2020.pdf|slides}} | ||
+ | * Gibaud B. European imaging biobanks. Iranian Brain Mapping Biobank Webinar Series, 9th July, 2020 {{:members:bernard.gibaud:bgibaudwebinariran2020.pdf|"Slides"}} | ||
+ | * Gibaud B, Brenet M, Pasquier G, Pasquier G, Roduit N, Spaltenstein J, Moubri-Tournes C, Van Dooren N et Ratib O. Développement d’une ressource de stockage intégrée pour les images et les données dosimétriques. Journée organisée par la Société Française de Radioprotection: La recherche Européenne en Radioprotection: quelles nouveautés ? IRSN, Fontenay-aux-Roses, 4 Février 2020 {{:members:bernard.gibaud:medirad-sfrp-irsn-04022020.ppt|"Slides"}} | ||
+ | * Gibaud B. Imaging biobanks: a key resource for biomedical research. French-Chinese Seminar on ICT for Health, 22 April 2019, Nanjing (China). {{:members:bernard.gibaud:bgibaudnankin2019.ppt|"Slides"}} | ||
+ | * Gibaud B, Pasquier G, Cordonnier E. How to anonymise imaging data for research ? Postgraduate Educational Programme: Joint Session of the ESR and BBMRI-ERIC:"Will the General Data Protection Regulation (GDPR) hamper the secondary use of clinical imaging data for research?", European Congress of Radiology 2019, Vienna (Austria).{{:members:bernard.gibaud:bernardgibaudecr2019final.ppt|"Slides"}} | ||
+ | * Gibaud B. Les biobanques d'images. Session Informatique - Avancées technologiques pour les radiologues 3.0, Journées Francophones de Radiologie, Paris, 2018.{{:members:bernard.gibaud:bernardgibaudjfr2018-biobanquesdimages.ppt|"Slides"}} | ||
+ | * Amdouni E, Gibaud B. Imaging Biomarker Ontology (IBO): A biomedical ontology to annotate and share imaging biomarker data. Journal of Data Semantics, Springer 2018.[[https://hal-univ-rennes1.archives-ouvertes.fr/hal-01887970|article]] | ||
* Gibaud B, Forestier G, Feldmann C, Ferrigno G, Gonçalves P, Haidegger T, Julliard C, Katic D, Kenngott H, Maier-Hein L, März K, de Momi E, Nagy DA, Nakawala H, Neumann J, Neumuth T, Rojas Balderrama J, Speidel S, Wagner M and Jannin P. Towards a standard ontology of Surgical Process Models. Int J Computer Asssited Radiology and Surgery doi: 10.1007/s11548-018-1824-5 | * Gibaud B, Forestier G, Feldmann C, Ferrigno G, Gonçalves P, Haidegger T, Julliard C, Katic D, Kenngott H, Maier-Hein L, März K, de Momi E, Nagy DA, Nakawala H, Neumann J, Neumuth T, Rojas Balderrama J, Speidel S, Wagner M and Jannin P. Towards a standard ontology of Surgical Process Models. Int J Computer Asssited Radiology and Surgery doi: 10.1007/s11548-018-1824-5 | ||
* Gibaud B. Imaging biobanks. Special Focus Session on Artificial Intelligence (AI) Applications. European Congress of Radiology 2018, Vienna (Austria). {{:members:bernard.gibaud:bernardgibaudecr2018-ai.ppt|"Slides"}} | * Gibaud B. Imaging biobanks. Special Focus Session on Artificial Intelligence (AI) Applications. European Congress of Radiology 2018, Vienna (Austria). {{:members:bernard.gibaud:bernardgibaudecr2018-ai.ppt|"Slides"}} | ||
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* Gibaud B. Organisation of dose management systems and repositories for radiation protection and biomedical research: possibilities and limitations of current implementations and standards. EFOMP Workshop: Radiation Dose Management systems and repositories: the present and the future. European Congress of Radiology 2018, Vienna (Austria). {{:members:bernard.gibaud:bernardgibaudecr2018efomp.ppt|"Slides"}} | * Gibaud B. Organisation of dose management systems and repositories for radiation protection and biomedical research: possibilities and limitations of current implementations and standards. EFOMP Workshop: Radiation Dose Management systems and repositories: the present and the future. European Congress of Radiology 2018, Vienna (Austria). {{:members:bernard.gibaud:bernardgibaudecr2018efomp.ppt|"Slides"}} | ||
* Gibaud B. Image sharing and biobanks. EuSoMII Academy: Game changers in radiology, Rotterdam, November 18th, 2017. {{:members:bernard.gibaud:bernardgibaudeusomii2017.pdf|"Slides"}} | * Gibaud B. Image sharing and biobanks. EuSoMII Academy: Game changers in radiology, Rotterdam, November 18th, 2017. {{:members:bernard.gibaud:bernardgibaudeusomii2017.pdf|"Slides"}} | ||
- | * Gibaud B. Intégration du compte rendu structuré dand l'environnement radiologique moderne. Journées Francophones de Radiologie. 15 Octobre 2016. Paris. {{:members:bernard.gibaud:bernard-gibaud-jfr2016.ppt|"Slides"}} | + | * Gibaud B. RE-engineering of RadLex:remarks and proposals. Private communication to the RadLex Steering Committee. 19 October 2017. {{:members:bernard.gibaud:bernard-gibaud-radlex19102017v2.ppt|"Slides"}} |
+ | * Gibaud B. Intégration du compte rendu structuré dand l'environnement radiologique moderne. Journées Francophones de Radiologie. 15 Octobre 2016. Paris. {{:members:bernard.gibaud:bernard-gibaud-radlex19102017v2.ppt|"Slides"}} | ||
* Holub P., Gibaud B. Biobanks and Imaging; the bioinformatic challenge, from MIABIS to DICOM. Medical imaging and biobanking (radiology and digital pathology) - a joint BBMRI/ESR session, Europe Biobank Week, 15 September 2016, Vienna (Austria). {{:members:bernard.gibaud:esr-bbmri-eric-wg-petrholub-bernardgibaud.pdf|"Slides"}} | * Holub P., Gibaud B. Biobanks and Imaging; the bioinformatic challenge, from MIABIS to DICOM. Medical imaging and biobanking (radiology and digital pathology) - a joint BBMRI/ESR session, Europe Biobank Week, 15 September 2016, Vienna (Austria). {{:members:bernard.gibaud:esr-bbmri-eric-wg-petrholub-bernardgibaud.pdf|"Slides"}} | ||
* Gibaud B. Semantic models and ontologies in Surgical Data Science. Workshop on Surgical Data Science, June 20, 2016, Heidelberg (Germany). {{:members:bernard.gibaud:sds-ws-bernardgibaud.ppt|"Slides"}} | * Gibaud B. Semantic models and ontologies in Surgical Data Science. Workshop on Surgical Data Science, June 20, 2016, Heidelberg (Germany). {{:members:bernard.gibaud:sds-ws-bernardgibaud.ppt|"Slides"}} | ||
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====== Resources ====== | ====== Resources ====== | ||
- | * Gibaud B. : Intéropérabilité syntaxique et sémantique pour l’échange de données et de connaissances en imagerie médicale, Thèse d’Habilitation à diriger des recherches, Université de Rennes I, 2000.{{:members:bernard.gibaud:hdrbgibaud.pdf|Habilitation thesis}} | + | * Gibaud B. : Intéropérabilité syntaxique et sémantique pour l’échange de données et de connaissances en imagerie médicale, Thèse d’Habilitation à diriger des recherches, Université de Rennes I, 2000.{{:members:bernard.gibaud:hdrbgibaud.pdf|Habilitation thesis}} {{:members:bernard.gibaud:slideshdrbgibaud.pdf|Slides Habilitation thesis}} |
* Imaging Biomarkers Ontology (b<>com, Emna Amdouni et Bernard Gibaud). {{:members:bernard.gibaud:IBO-final-version.zip|IBO ontology files}} | * Imaging Biomarkers Ontology (b<>com, Emna Amdouni et Bernard Gibaud). {{:members:bernard.gibaud:IBO-final-version.zip|IBO ontology files}} | ||
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[[http://www.ncbi.nlm.nih.gov/pubmed?term=Gibaud B[Author]|PubMed list]] | [[http://www.ncbi.nlm.nih.gov/pubmed?term=Gibaud B[Author]|PubMed list]] | ||
- | {{:members:bernard.gibaud:publicationsbgibaud.pdf|}} | + | {{:members:bernard.gibaud:publicationsbgibaudv3.pdf|All publications}} |
====== Complete list of Publications ====== | ====== Complete list of Publications ====== | ||
[[https://medicis.univ-rennes1.fr/_media/members/bernard.gibaud/publicationsbgibaudv2.pdf|Complete list]] | [[https://medicis.univ-rennes1.fr/_media/members/bernard.gibaud/publicationsbgibaudv2.pdf|Complete list]] | ||
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<span id="halpublibg"> | <span id="halpublibg"> | ||
- | <p><iframe width="99%" scrolling="no" height="2000" frameborder="0" src=" | + | <p><iframe frameborder="0" height="2000px" longdesc="http://hal-univ-rennes1.archives-ouvertes.fr/LTSI-MEDICIS" sandbox="allow-popups allow-forms" scrolling="auto" src="https://halur1.univ-rennes1.fr/Publis-HAL-SCD.php?collection_exp=LTSI&auteur_exp=B. Gibaud,Bernard Gibaud&mailto=bernard.gibaud@univ-rennes1.fr&lang=en&detail=oui&bt=non&lim_aut=15&anneedep=1996&css=https://halur1.univ-rennes1.fr/css/publis-HAL-drup.css" width="100%"></iframe></p> |
- | https://halur1.univ-rennes1.fr/Publis-HAL-SCD.php?collection_exp=LTSI&auteur_exp=B. Gibaud,Bernard Gibaud&mailto=bernard.gibaud@univ-rennes1.fr&lang=en&css=http://ressources-infoglue.univ-rennes1.fr/_styles/www.univ-rennes1.fr/hal-sdv.css&bt=non&tous=oui&annee_publideb=&anneedep=1996"></iframe></p> | + | |
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